Sequencing Files
SeqDesk monitors a configurable data directory for sequencing files. It automatically detects FASTQ files, pairs forward and reverse reads, and lets you assign them to samples — either automatically or manually.
File Discovery & Auto-DetectDirectory scanning, R1/R2 pairing, naming conventions, and scan caching.Assigning Files to SamplesAuto-detect matching, manual assignment, and confidence thresholds.
The data directory path and scan settings are configured in Administration → Data Storage.