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Pipelines & AnalysisOverview

Pipelines & Analysis

SeqDesk integrates nf-core Nextflow pipelines for bioinformatics analysis. Pipelines run from a study context, generate samplesheets automatically, and report progress in real time through weblog events.

Running a PipelineStart from a study, select samples, configure parameters, and launch.Monitoring & DAG VisualizationWeblog events, DAG view, process progress, and real-time tracking.Available PipelinesMAG, SubMG, and MetaxPath pipeline descriptions and configurations.Adding Custom PipelinesPipeline package structure: manifest, definition, registry, samplesheet.Results: Assemblies & BinsAssembly model, MAGs, completeness/contamination metrics, and artifacts.