Coordinate sample submissions, run bioinformatics pipelines, and publish data to public archives — built for core facilities and research groups.
npm i -g seqdeskInstalls latest stable release v1.1.83. Self-hosted on your institution's infrastructure.
Live Demo
Explore a fully functional workspace pre-loaded with sample orders, studies, and submissions. Switch between the researcher and facility admin views.
Live demo is best on desktop
The interactive demo requires a larger screen. Open this page on a desktop browser or try the full demo link below.
Open full demoSequencing Technologies
Select your platform, device, and compatible consumables from a curated registry.
Researcher View
Researchers enter order details, add samples, and submit to the facility. AI-assisted validation checks entries in real-time.
Step 1 of 3
Data Publishing
Register studies and samples to ENA directly from SeqDesk, then submit reads, assemblies, and genome bins via the integrated submg pipeline. All accession numbers are tracked automatically.
Powered by submg — Tubbesing, Schlüter & Sczyrba, 2025
Human Gut · 3 samples
Researcher View
Group samples into studies, select MIxS environment checklists, and prepare metadata for submission.
Step 1 of 4
Integrated Pipelines
Study pipelines run across a whole study and combine multiple samples for more complex analysis, reporting, and data upload or submission workflows.