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SubMG Submission

Study pipeline · submg v1.0.0

Prepare and submit reads, assemblies, and bins to ENA.

Study pipelinesubmissionSeqDesk
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About

SubMG packages SeqDesk's ENA submission workflow so facilities can validate metadata, assemble submission files, and run submissions from the same pipeline settings UI.

Requirements

  • Study ENA accession
  • Per-sample reads with checksums
  • Sample metadata and taxonomy
  • Assemblies (bins optional)

Workflow Notes

SeqDesk generates submission manifests from study, sample, read, assembly, and bin metadata, then executes the SubMG submission workflow with configurable checks.

Inputs

  • Paired-end FASTQ reads with checksums
  • Sample taxonomy and checklist metadata
  • Assemblies and optional bins
  • Study ENA accession

Outputs

  • Submission logs
  • Submission metadata summary

SubMG Submission Workflow

Data flow from declared study inputs through analysis steps to final outputs.

No workflow graph data is available for this pipeline.