Coordinate sample submissions, run bioinformatics pipelines, and publish data to public archives — built for core facilities and research groups.
npm i -g seqdeskInstalls latest stable release v1.1.79. Self-hosted on your institution's infrastructure.
Facility View
Facility staff see incoming orders in real-time and assign sequencing reads to individual samples.
Sequencing Technologies
Select your platform, device, and compatible consumables from a curated registry.
Integrated Pipelines
Run curated nf-core workflows directly on your sequencing data. Nextflow-based, SLURM-ready, and fully reproducible.
Data Publishing
Register studies and samples to ENA directly from SeqDesk, then submit reads, assemblies, and genome bins via the integrated submg pipeline. All accession numbers are tracked automatically.
Powered by submg — Tubbesing, Schlüter & Sczyrba, 2025
Human Gut · 3 samples